FeatureScan: revealing property-dependent similarity of nucleotide sequences
نویسندگان
چکیده
منابع مشابه
FeatureScan: revealing property-dependent similarity of nucleotide sequences
FeatureScan is a software package aiming to reveal novel types of DNA sequence similarity by comparing physico-chemical properties. Thirty-eight different parameters of DNA double strands such as charge, melting enthalpy, conformational parameters and the like are provided. As input FeatureScan requires two sequences, a pattern sequence and a target sequence, search conditions are set by select...
متن کاملMethod revealing latent periodicity of the nucleotide sequences modified for a case of small samples.
An earlier reported method for revealing latent periodicity of the nucleotide sequences has been considerably modified in a case of small samples, by applying a Monte Carlo method. This improved method has been used to search for the latent periodicity of some nucleotide sequences of the EMBL data bank. The existence of the nucleotide sequences' latent periodicity has been shown for some genes....
متن کاملHomogenization of tandemly repeated nucleotide sequences by distance-dependent nucleotide sequence conversion.
Previous work revealed that recurrent mutations (= mutation occurring more than once) in the tandemly repeated arrays present in nontranscribed spacers (NTS) of ribosomal RNA genes (rDNA) are clustered, i.e., they most frequently occur in repeats with adjacent or alternate distribution. A possible explanation is that the likelihood of heteroduplex formation, a prerequisite of gene conversion, d...
متن کاملSimilarity of symbolic sequences
A new numerical characterization of symbolic sequences is proposed. The partition of sequence based on Ke and Tong algorithm is a starting point. Algorithm decomposes original sequence into set of distinct subsequences a patterns. The set of subsequences common for two symbolic sequences (their intersection) is proposed as a measure of similarity between them. The new similarity measure works w...
متن کاملAnalysis of similarity/dissimilarity of DNA sequences based on adjacent nucleotide pair representation
Introduction of graphic representation for nucleotide or protein sequences can provide intuitive overall pictures as well as useful insights for performing large-scale similarity analysis. In this paper, we are analyzing the similarity/dissimilarity of the mitochondrial genome sequences from twenty four mammal species. The analysis is important in finding the relatedness among the species and e...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: Nucleic Acids Research
سال: 2006
ISSN: 0305-1048,1362-4962
DOI: 10.1093/nar/gkl337